Pairwise Ising Model Analysis of Human Cortical Neuron Recordings
نویسندگان
چکیده
During wakefulness and deep sleep brain states, cortical neural networks show a different behavior, with the second characterized by transients of high network activity. To investigate their impact on neuronal behavior, we apply a pairwise Ising model analysis by inferring the maximum entropy model that reproduces single and pairwise moments of the neuron’s spiking activity. In this work we first review the inference algorithm introduced in Ferrari, Phys. Rev. E (2016) [1]. We then succeed in applying the algorithm to infer the model from a large ensemble of neurons recorded by multi-electrode array in human temporal cortex. We compare the Ising model performance in capturing the statistical properties of the network activity during wakefulness and deep sleep. For the latter, the pairwise model misses relevant transients of high network activity, suggesting that additional constraints are necessary to accurately model the data.
منابع مشابه
Modeling Higher-Order Correlations within Cortical Microcolumns
We statistically characterize the population spiking activity obtained from simultaneous recordings of neurons across all layers of a cortical microcolumn. Three types of models are compared: an Ising model which captures pairwise correlations between units, a Restricted Boltzmann Machine (RBM) which allows for modeling of higher-order correlations, and a semi-Restricted Boltzmann Machine which...
متن کاملHigher Order Correlations within Cortical Layers Dominate Functional Connectivity in Microcolumns
We report on simultaneous recordings from cells in all layers of visual cortex and models developed to capture the higher order structure of population spiking activity. Specifically, we use Ising, Restricted Boltzmann Machine (RBM) and semi-Restricted Boltzmann Machine (sRBM) models to reveal laminar patterns of activity. While the Ising model describes only pairwise couplings, the RBM and sRB...
متن کاملApproximate Inference for Time-Varying Interactions and Macroscopic Dynamics of Neural Populations
The models in statistical physics such as an Ising model offer a convenient way to characterize stationary activity of neural populations. Such stationary activity of neurons may be expected for recordings from in vitro slices or anesthetized animals. However, modeling activity of cortical circuitries of awake animals has been more challenging because both spike-rates and interactions can chang...
متن کاملModeling Laminar Recordings from Visual Cortex with Semi-Restricted Boltzmann Machines
The proliferation of high density recording techniques presents us with new challenges for characterizing the statistics of neural activity over populations of many neurons. The Ising model, which is the maximum entropy model for pairwise correlations, has been used to model the instantaneous state of a population of neurons. This model suffers from two major limitations: 1) Estimation for larg...
متن کاملSpin glass models for a network of real neurons
Ising models with pairwise interactions are the least structured, or maximum–entropy, probability distributions that exactly reproduce measured pairwise correlations between spins. Here we use this equivalence to construct Ising models that describe the correlated spiking activity of populations of 40 neurons in the salamander retina responding to natural movies. We show that pairwise interacti...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
عنوان ژورنال:
دوره شماره
صفحات -
تاریخ انتشار 2017